e9038bdb76
	 
				 
					 
					
						
						
							
							Hide inappropriate figure title  
						
						 
						
						
						
						
					 
					
						2024-04-27 15:21:57 +02:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						af947dbf65
	 
				 
					 
					
						
						
							
							Add articles/Euclidean distance - Wikipedia/  
						
						 
						
						
						
						
					 
					
						2024-04-27 15:08:56 +02:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						5baabae99d
	 
				 
					 
					
						
						
							
							Make mean initialization more general in iterativeMean  
						
						 
						
						
						
						
					 
					
						2024-04-26 15:56:10 +02:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						1ea1bde910
	 
				 
					 
					
						
						
							
							Leverage iterativeMean in extract_noise.py  
						
						 
						
						
						
						
					 
					
						2024-04-26 14:25:08 +02:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						674f87d480
	 
				 
					 
					
						
						
							
							Remove unnecessary iterativeMean parentheses and rename addElement to add  
						
						 
						
						
						
						
					 
					
						2024-04-26 14:22:59 +02:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						7af96d6bf6
	 
				 
					 
					
						
						
							
							Add iterativeMean to utils  
						
						 
						
						... 
						
						
						
						Verified with:
```py
myIterativeMean = iterativeMean()
print(myIterativeMean.mean)
myIterativeMean.addElement(2)
print(myIterativeMean.mean)
myIterativeMean.addElement(3)
print(myIterativeMean.mean)
```
Note that cannot simplify as follows in the general case of using images as
`element`s for instance:
```diff
diff --git a/datasets/raise/utils.py b/datasets/raise/utils.py
index fba5523..a116edb 100644
--- a/datasets/raise/utils.py
+++ b/datasets/raise/utils.py
@@ -27,12 +27,9 @@ def denoise(imageNpArray, denoiserName):
     return imageDenoisedNpArray
 class iterativeMean():
-    mean = None
+    mean = 0
     numberOfElementsInMean = 0
     def addElement(self, element):
-        if self.mean is None:
-            self.mean = element
-        else:
-            self.mean = ((self.mean * self.numberOfElementsInMean) + element) / (self.numberOfElementsInMean + 1)
+        self.mean = ((self.mean * self.numberOfElementsInMean) + element) / (self.numberOfElementsInMean + 1)
         self.numberOfElementsInMean += 1
\ No newline at end of file
``` 
						
						
					 
					
						2024-04-26 14:16:35 +02:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						7684e1408d
	 
				 
					 
					
						
						
							
							Remove unused imports in split_and_compare_prnus_of_subgroups.py  
						
						 
						
						
						
						
					 
					
						2024-04-26 13:58:19 +02:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						9c469cf67a
	 
				 
					 
					
						
						
							
							Leverage utils.py denoise in split_and_compare_prnus_of_subgroups.py  
						
						 
						
						
						
						
					 
					
						2024-04-26 13:58:00 +02:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						9d2903af60
	 
				 
					 
					
						
						
							
							Move denoise from extract_noise.py to utils.py  
						
						 
						
						... 
						
						
						
						See next commit leveraging it in `split_and_compare_prnus_of_subgroups.py` 
						
						
					 
					
						2024-04-26 13:57:18 +02:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						6a93b04686
	 
				 
					 
					
						
						
							
							Remove already used previous temporary analysis commit code  
						
						 
						
						
						
						
					 
					
						2024-04-26 13:49:31 +02:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						b52fff9deb
	 
				 
					 
					
						
						
							
							Add commented code to enforce merging Numpy arrays with a greyscale  
						
						 
						
						... 
						
						
						
						colormap. 
						
						
					 
					
						2024-04-26 13:48:44 +02:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						3ffcd33efe
	 
				 
					 
					
						
						
							
							Add Gaussian filter to blur images when using mean as denoiser  
						
						 
						
						... 
						
						
						
						See
https://docs.scipy.org/doc/scipy-1.13.0/reference/generated/scipy.ndimage.gaussian_filter.html#ba1e4df0-d4be-47c2-81e5-059286837a2b . 
						
						
					 
					
						2024-04-26 04:39:06 +02:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						9641641b61
	 
				 
					 
					
						
						
							
							Remove commented code from analyze_bayer_filter_mean_denoiser.py  
						
						 
						
						
						
						
					 
					
						2024-04-26 04:13:08 +02:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						3e8b607b97
	 
				 
					 
					
						
						
							
							Add analyze_bayer_filter_mean_denoiser.py  
						
						 
						
						
						
						
					 
					
						2024-04-26 04:12:13 +02:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						f1cafc1eb1
	 
				 
					 
					
						
						
							
							Improve yticks of boxplot in flat-field_pointer.py  
						
						 
						
						
						
						
					 
					
						2024-04-26 04:10:41 +02:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						25b3b30634
	 
				 
					 
					
						
						
							
							Remove a commented print in plot_dates.py  
						
						 
						
						
						
						
					 
					
						2024-04-26 04:10:02 +02:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						3ada720db9
	 
				 
					 
					
						
						
							
							Add execution results, plot of locations and distance analysis  
						
						 
						
						
						
						
					 
					
						2024-04-26 03:05:17 +02:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						56037b058b
	 
				 
					 
					
						
						
							
							Add Zoom to rectangle by default  
						
						 
						
						
						
						
					 
					
						2024-04-26 01:49:57 +02:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						f5c235c3cd
	 
				 
					 
					
						
						
							
							Add support to TIF for RAISE flat-field  
						
						 
						
						
						
						
					 
					
						2024-04-26 01:49:13 +02:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						ab72da470e
	 
				 
					 
					
						
						
							
							Ready for pointing  
						
						 
						
						
						
						
					 
					
						2024-04-26 01:34:55 +02:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						981e2a48ae
	 
				 
					 
					
						
						
							
							Add flat-field_pointer.py  
						
						 
						
						... 
						
						
						
						https://matplotlib.org/3.8.4/gallery/event_handling/coords_demo.html  
						
						
					 
					
						2024-04-26 01:21:20 +02:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						1e8d9d844c
	 
				 
					 
					
						
						
							
							Make plot_dates.py leverage photo exifs  
						
						 
						
						
						
						
					 
					
						2024-04-26 00:52:52 +02:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						7cfe566290
	 
				 
					 
					
						
						
							
							Add plot_dates.py as it is as a Matplotlib example  
						
						 
						
						... 
						
						
						
						https://matplotlib.org/3.8.0/gallery/lines_bars_and_markers/timeline.html  
						
						
					 
					
						2024-04-26 00:51:12 +02:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						719bb487dd
	 
				 
					 
					
						
						
							
							Restore other than raw images support  
						
						 
						
						
						
						
					 
					
						2024-04-25 18:12:36 +02:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						f88b6ec1a9
	 
				 
					 
					
						
						
							
							Save mean of each color channel to merge them into a single image being  
						
						 
						
						... 
						
						
						
						the mean of images
Otherwise for each color channel could use:
```py
plt.imsave(f'{fileName}.png', colorMean)
``` 
						
						
					 
					
						2024-04-25 16:00:23 +02:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						4907d0c0fb
	 
				 
					 
					
						
						
							
							Add and use saveNpArray  
						
						 
						
						
						
						
					 
					
						2024-04-25 15:59:26 +02:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						65708e4977
	 
				 
					 
					
						
						
							
							Correctly implement mean denoiser  
						
						 
						
						... 
						
						
						
						Used to have:
```py
imageDenoisedNpArray = imageNpArray - means[color]
imageNoiseNpArray = imageNpArray - imageDenoisedNpArray
```
so:
```py
imageNoiseNpArray = means[color]
```
then we mean the mean...
While should have:
```py
imageDenoisedNpArray = means[color]
``` 
						
						
					 
					
						2024-04-25 15:58:24 +02:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						60a4f78fa6
	 
				 
					 
					
						
						
							
							Ease providing {min,max}Color  
						
						 
						
						
						
						
					 
					
						2024-04-25 15:30:23 +02:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						c642fa430e
	 
				 
					 
					
						
						
							
							Add commented code to crop image  
						
						 
						
						... 
						
						
						
						It is commented as it does not seem to be finally what we are looking
for. 
						
						
					 
					
						2024-04-25 14:37:08 +02:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						674ce8dabe
	 
				 
					 
					
						
						
							
							Use relative path for os.chdir in generate_histogram.py  
						
						 
						
						
						
						
					 
					
						2024-04-25 14:36:38 +02:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						807f586841
	 
				 
					 
					
						
						
							
							Remove no more relevant print in show_mean_noise.py  
						
						 
						
						
						
						
					 
					
						2024-04-25 14:28:36 +02:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						5c1f346f2e
	 
				 
					 
					
						
						
							
							Clean single image histogram  
						
						 
						
						... 
						
						
						
						Source: https://www.codespeedy.com/plot-a-histogram-for-an-image-in-pil-python/  
						
						
					 
					
						2024-04-25 14:16:58 +02:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						e2602347d4
	 
				 
					 
					
						
						
							
							Use a single figure to generate histogram  
						
						 
						
						
						
						
					 
					
						2024-04-25 12:39:24 +02:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						ec3ddd9c94
	 
				 
					 
					
						
						
							
							Add generate_histogram.py  
						
						 
						
						
						
						
					 
					
						2024-04-25 12:37:21 +02:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
							
							
								 
								Benjamin Loison 
							
						 
					 
					
						
						
							
						
						a78dcd6f99 
					 
					
						
						
							
							Clean extract_noise.py  
						
						 
						
						
						
						
					 
					
						2024-04-24 14:10:22 +02:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
							
							
								 
								Benjamin Loison 
							
						 
					 
					
						
						
							
						
						c65b3642d8 
					 
					
						
						
							
							Precise multiple_colors.png file name  
						
						 
						
						
						
						
					 
					
						2024-04-23 05:01:22 +02:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						be9d4f8f4b
	 
				 
					 
					
						
						
							
							Add denoiser mean possibility  
						
						 
						
						
						
						
					 
					
						2024-04-23 04:39:28 +02:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						a15b356e16
	 
				 
					 
					
						
						
							
							Add and use getImageNpArray  
						
						 
						
						
						
						
					 
					
						2024-04-23 04:38:40 +02:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						809aa7fb43
	 
				 
					 
					
						
						
							
							Correct Rafael images filtering  
						
						 
						
						
						
						
					 
					
						2024-04-23 04:37:46 +02:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						e3bbb2c63d
	 
				 
					 
					
						
						
							
							Precise possibilities for denoiser  
						
						 
						
						
						
						
					 
					
						2024-04-23 03:57:43 +02:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						fc0cc8808a
	 
				 
					 
					
						
						
							
							Add the missing import numpy as np in merge_single_color_channel_images_according_to_bayer_filter.py  
						
						 
						
						
						
						
					 
					
						2024-04-23 03:51:56 +02:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
							
							
								 
								Benjamin Loison 
							
						 
					 
					
						
						
							
						
						9f2334ceea 
					 
					
						
						
							
							Precise imagesFolderPathFileName depending on sky or wall  
						
						 
						
						
						
						
					 
					
						2024-04-21 19:54:04 +02:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
							
							
								 
								Benjamin Loison 
							
						 
					 
					
						
						
							
						
						e2406071d4 
					 
					
						
						
							
							Simplify specifying colors  
						
						 
						
						
						
						
					 
					
						2024-04-21 19:53:21 +02:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
							
							
								 
								Benjamin Loison 
							
						 
					 
					
						
						
							
						
						29f3acc479 
					 
					
						
						
							
							Enable computing specific colors  
						
						 
						
						... 
						
						
						
						For instance if have tested on one and do not want to waste its
computation. 
						
						
					 
					
						2024-04-21 19:52:52 +02:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						9365b58d1d
	 
				 
					 
					
						
						
							
							#49 : Remove intermediary bias by not working on images but numpy arrays instead  
						
						 
						
						
						
						
					 
					
						2024-04-19 17:21:54 +02:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						675b01271a
	 
				 
					 
					
						
						
							
							#49 : Remove shift per color channel  
						
						 
						
						
						
						
					 
					
						2024-04-19 17:19:47 +02:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						77330e24d2
	 
				 
					 
					
						
						
							
							Make datasets/raise/merge_single_color_channel_images_according_to_bayer_filter.py production ready  
						
						 
						
						
						
						
					 
					
						2024-04-18 01:21:31 +02:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						0b52e781e3
	 
				 
					 
					
						
						
							
							First try to merge multiple single color channel images  
						
						 
						
						
						
						
					 
					
						2024-04-18 01:00:41 +02:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						6aca1126a1
	 
				 
					 
					
						
						
							
							Complete dict assignment  
						
						 
						
						
						
						
					 
					
						2024-04-18 00:53:15 +02:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						3636335b63
	 
				 
					 
					
						
						
							
							Add match statement  
						
						 
						
						
						
						
					 
					
						2024-04-18 00:52:08 +02:00